Gotcha: bacteria found on stuff

BART is not an overly enthusiastic Simpson’s fan; it stands for Bay Area Rapid Transit, rode it a couple of years ago, didn’t notice any bugs up, or out, my butt.

The New York Times reports that riders on the BART system (that’s in and around San Francisco) have long complained about germs in the hard-to-clean cloth seats. As Bob Franklin, the BART board president, acknowledged, “People don’t know what’s in there.”

The Bay Citizen commissioned Darleen Franklin, a supervisor at San Francisco State University’s biology lab, to analyze the bacterial content of a random BART seat.

Fecal and skin-borne bacteria resistant to antibiotics were found in a seat on a train headed from Daly City to Dublin/Pleasanton. Further testing on the skin-borne bacteria showed characteristics of methicillin-resistant staphylococcus aureus, or MRSA, the drug-resistant bacterium that causes potentially lethal infections, although Ms. Franklin cautioned that the MRSA findings were preliminary.

High concentrations of at least nine bacteria strains and several types of mold were found on the seat. Even after Ms. Franklin cleaned the cushion with an alcohol wipe, potentially harmful bacteria were found growing in the fabric.

Dr. John Swartzberg, a clinical professor at the School of Public Health at the University of California, Berkeley, played down the threat of infection from harmful bacteria on a BART seat. “I suspect it’s not a very big problem. That said, if there’s another way to do it, where you can clean it better, then you should do it.”

The rest of the story is about hygiene concerns as BART officials determine what kind of seats to install for a new fleet of cars in 2017.

It’s another in a long line of Gotcha-type stories that find bacteria on things – doorknobs, money, keyboards, sex toys.

Does it mean anything? And where are the sick people?

These kinds of Gotcha stories have been going on a long time.

In 1995, the front page of Toronto’s Globe and Mail proclaimed, "you probably handle an unimaginably dangerous collection of harmful bacteria" while going about your kitchenly chores, and that "90 per cent of food-related illness in the home could be prevented by using paper towels when preparing foods, especially meats."

The killer-dishrag story did meet the primary goal of its creators: to sell more sponges. Specifically, anti-bacterial sponges manufactured by 3M Co. of Minneapolis, Minn.

Dr. Charles P. Gerba, an environmental microbiologist at the University of Arizona in Tucson, was contracted by 3M to perform tests of household dishrags and sponges in five U.S. cities and compare the results to the 3M sponge. Not surprisingly, Dr. Gerba found about 100 times more bacteria in dishrags retrieved from households.

Then the public relations firm hired by 3M peddled the results, taking Dr. Gerba on a five-city tour to release the results. That was in Aug. 1995. Several stories appeared on the U.S. wire services. Why the Globe decided to run the story at the end of Dec. 1995 remains a mystery.

Gerba showed up again with a bugs-in-reusable grocery bags report last year, that has not been published in a peer-reviewed journal. And last week, Gerba was in the news again, saying his group had swabbed the handles of 85 grocery carts in four states for bacterial contamination and that 72 per cent of the carts had a positive marker for fecal bacteria.

Scientists say this study helps explain why earlier investigations found kids who touch the handles, are more likely than others, to get infected with bacteria like salmonella. Researchers reported in the Journal of Food Protection in June 2010 that kids can be exposed to raw meat and poultry products while riding in shopping carts.

But that was a study published in a peer-reviewed journal. The bugs-on-shopping-cart handles is a news story with legs – it keeps showing up – but the experimental design and conclusions have not been subject to peer-review, and the conclusions may be erroneous. Who knows?

On the shopping cart results, Dr. Neil Fishman, an infectious disease expert and director of health care epidemiology and infection prevention at the University of Pennsylvania Health System, is concerned that risk isn’t very big.

“I’d be worried if there was any evidence of any disease outbreaks related to shopping cart use. There isn’t — and we’ve been using them for a long time.”

While there may, indeed, be bacteria on shopping cart handles, they can also be found on doorknobs, countertops and a host of other items we touch every day, Fishman said. “My guess is that there are more bacteria on a car seat than on a shopping cart,” he added.

Josh Rosenau , writing for Science Blogs last night, picked up on the same theme, citing microbiologist Pat Fidopiastis as saying “none of this means much unless you can show me a significant risk involved with coming in contact with a shopping cart. You might be able to say that "X percent" more kids get sick if they touch a shopping cart handle versus a bathroom door knob, for example. But what are the actual numbers? Is this like saying, "More people get struck by lightning if they walk around outside in a storm than those who stay in their homes?”

Gotcha.

E. coli outbreak: Minn. farm says we didn’t do it, despite DNA test

For some reason, foodborne illness outbreaks involving raw milk, or organic or some other small food category require exaggerated level of proof to be believed. Epidemiology doesn’t seem to count, neither does knowledge of microbiology.

There’s at least five people sick with E. coli O157:H7 linked to consuming raw milk from the Hartmann Dairy Farm in southern Minnesota.

Yesterday, the farm released a statement saying,

"As of today, there is no evidence of any harmful bacteria in any raw milk, cheese, meat or other product sampled from the Hartmann Farm. The State has engaged in a serious regulatory and potentially criminal action in a grossly negligent manner with total disregard for the defamatory content of their media campaign."

OK, Bart (below, left, exactly as shown).

Today, the Minnesota Department of Health answered some questions:

What evidence do you have that raw milk from the Hartmann farm caused the illnesses?

This investigation began like many other foodborne investigations: Someone becomes ill, sees their physician and the physician sends a stool specimen to a clinical laboratory. If that laboratory finds, or “isolates”, one of a number of illness-causing bacteria (eg., Salmonella, E. coli O157:H7), they send that bacterial isolate to the MDH Public Health Laboratory (PHL) for further testing. Each bacterial isolate is DNA fingerprinted by a technique called pulsed-field gel electrophoresis (PFGE).

During May 2010, E. coli O157:H7 isolates from 5 patients sent by separate clinical laboratories to the MDH PHL were found to all have the same DNA fingerprint by PFGE testing.

This particular DNA fingerprint type (which also can be called a “strain”) of E. coli O157:H7 had never been seen before in Minnesota. The fact that multiple patients all were infected with this new strain in such a tight timeframe indicates that there was a common source for the illnesses. In other words, the patients must have acquired their infection from the same source.

In any foodborne illness investigation, MDH epidemiologists interview patients about an extensive array of possible exposures. These interviewers use a standard questionnaire and interview technique. This includes asking questions about what the ill people ate, including meat, produce and other food items. It also includes questions about recreational water and drinking water, contact with animals, daycare attendance, and more.

In this outbreak, the ill people came from communities across Minnesota, and the only exposure the cases had in common was consumption of raw dairy products from the Hartmann farm. This connection, and the fact that the same strain of E. coli O157:H7 found in the ill people was found in several animals and from several environmental samples on the Hartmann farm, clearly indicates that the farm was the source of the E. coli O157:H7 that made the people ill.

What is the significance of finding E. coli O157 in the environmental samples from the farm?

The strain found on the farm matches the strain found in the cases of illness. Again, this is a strain that has never been seen before in Minnesota.
This tells us that the bacteria that sickened the people was on the Hartmann farm and since several of the people that became ill never visited the farm, their only potential source would have been food products from the farm.

Did you find the outbreak strain in dairy product from the cases’ homes or from the farm?

The outbreak strain of E. coli O157:H7 has not been found in product yet. However, product samples that were collected from the farm were obtained one week to several weeks after production of products that made people sick. Other strains of Shiga toxin-producing E. coli were found, indicating an ongoing problem with contamination.

The fact that the outbreak strain was not found in samples of product taken from the farm or homes does not mean it wasn’t in the product that sickened the individuals. In many cases, only particular batches of product may have been contaminated. The product from the contaminated batches may not be available for testing because it has already been consumed. Even if the contaminated batches are available for testing, the contamination may not be uniformly distributed throughout the product. It can be difficult to find the “needle in the haystack” when only small amounts of product are able to be used for a laboratory test. The fact that some pathogen was not found in a sample taken today does not mean it wasn’t there yesterday or a week ago, or won’t be there tomorrow. Also, since raw milk contains many types of bacteria it is a difficult process to isolate individual bacteria growths and find the disease-causing strains.

The outbreak strain of E. coli O157:H7 was found in the manure of some individual calves, sheep, and cattle pens. Of note, the calves were likely drinking the same milk as that consumed by the cases.

Standard public health practice does not require finding the illness strain of pathogen in either environmental or product samples in order to determine the source of an outbreak and before intervention to prevent further illness should be initiated. In fact, it is quite rare in foodborne investigations that food product is available for testing as it is often perishable or has been completely consumed by the time the outbreak is recognized. State health and agriculture officials often act on epidemiologic evidence to remove contaminated products from the marketplace and prevent additional illnesses. Indeed, to do nothing in the face of such compelling evidence would be irresponsible – regardless of the size or nature of operation implicated.

Are there more cases being investigated?

Yes, MDH has received additional reports of illness in several consumers of Hartmann dairy products that it is investigating.