Plasmid way: E. coli be swapping genes

Enterohemorrhagic Escherichia coli (EHEC) O157:H7 strain EDL933 harbors multiple prophage-associated open reading frames (ORFs) in its genome which are highly homologous to the chromosomal nanS gene. The latter is part of the nanCMS operon, which is present in most E. coli strains and encodes an esterase which is responsible for the monodeacetylation of 5-N-acetyl-9-O-acetyl neuraminic acid (Neu5,9Ac2). Whereas one prophage-borne ORF (z1466) has been characterized in previous studies, the functions of the other nanS-homologous ORFs are unknown.

bacterial_conjugation_charles_brintonIn the current study, the nanS-homologous ORFs of EDL933 were initially studied in silico. Due to their homology to the chromosomal nanS gene and their location in prophage genomes, we designated them nanS-p and numbered the different nanS-p alleles consecutively from 1 to 10. The two alleles nanS-p2 and nanS-p4 were selected for production of recombinant proteins, their enzymatic activities were investigated, and differences in their temperature optima were found. Furthermore, a function of these enzymes in substrate utilization could be demonstrated using an E. coli C600ΔnanS mutant in a growth medium with Neu5,9Ac2 as the carbon source and supplementation with the different recombinant NanS-p proteins. Moreover, generation of sequential deletions of all nanS-p alleles in strain EDL933 and subsequent growth experiments demonstrated a gene dose effect on the utilization of Neu5,9Ac2. Since Neu5,9Ac2 is an important component of human and animal gut mucus and since the nutrient availability in the large intestine is limited, we hypothesize that the presence of multiple Neu5,9Ac2 esterases provides them a nutrient supply under certain conditions in the large intestine, even if particular prophages are lost.

Importance

In this study, a group of homologous prophage-borne nanS-p alleles and two of the corresponding enzymes of enterohemorrhagic E. coli (EHEC) O157:H7 strain EDL933 that may be important to provide alternative genes for substrate utilization were characterized.

Escherichia coli O157:H7 strain EDL933 harbors multiple functional prophage-associated genes necessary for the utilization of 5-N-acetyl-9-O-acetyl neuraminic acid as a growth substrate

Appl. Environ. Microbiol. October 2016 vol. 82 no. 19 5940-5950, posted online 29 July 2016, doi: 10.1128/AEM.01671-16

Nadja Saile, Anja Voigt, Sarah Kessler, Timo Stressler, Jochen Klumpp, Lutz Fischer and Herbert Schmidt

http://aem.asm.org/content/82/19/5940.abstract?etoc

No cause IDed, but UK children told to get back to class after E. coli outbreak

There were 71 pupils absent at Carlogie Primary on Monday which was a fifth of the school roll of 346 with 46 being kept off as a precaution.

On Tuesday 57 were absent with 37 kept off as a precaution.

A spokesman for Angus Council said: “Members of the community are understandably concerned and have provided tremendous support in trying to minimise spread of infection and identify a possible source.

“The cases and contacts have now been identified and children should now be attending school or nursery unless they are symptomatic or have been formally excluded by the Health Protection Team.”

Part of Tayside Children’s Hospital at Ninewells in Dundee has been set aside for confirmed and suspected cases in the Angus E. coli O157 outbreak.

NHS Tayside confirmed the move as part of what health chiefs described as an “evolving situation” in which a young girl also remains seriously ill in a Glasgow hospital.

The Peter Pan playgroup at the centre of the Angus investigation remains closed.

Raw is risky: In Netherland E. coli in beef tartare is the ‘poop bacteria’

Because it’s raw beef.

Dumbasses.

Supermarket chain Jumbo is removing various beef tartar products, rissole and steak du boeuf from its shelves as the meat products may contain the E. coli bacteria.

jumbo_supermarktenAnd maybe something was lost in translation, but the NL Times story says, the E.coli bacteria, also known as the poop bacteria, can cause food poisoning symptoms such as diarrhea, vomiting and abdominal cramps. It is particularly dangerous to pregnant women, elderly people and people with weakened immune systems.

23 years late, Chipotle gets food safety religion (or so they lecture)

I just registered for an Ice Hockey Australia Level 2 coaching course.

The course is rarely offered, and there’s only a couple of level 2 coaches in Queensland. It will take 25 hours of training to complete.

dp-sorenne-becThat’s on top of the 16 hours I put in for Coach 1 in Australia, and recertification every two years.

It’s similar to the Intermediate Level Coach status I had in Canada back in 2001, which was required to coach a rep or travel team.

It’s a lot of time, sitting in a classroom, and on the ice.

I view it as my church, my community service.

So when Chipotle makes a big deal saying all of its managers will be trained in food safety the ServSafe way, I shrug, and ask, why weren’t they before?

How far was Chipotle’s head up its own moralistic ass that it paid more attention to food porn – like hormones and GE foods – than to food safety, the things that make people barf?

Great, you’re going to require training. Anyone ask if the training is any good? Third-party audits? Nice soundbite but they’re just a paycheck. Handwashing every thirty minutes? McDonald’s have been doing that for decades (you’d think Chipotle would have picked that up when they were partnered with McDonald’s, but no, there was food porn to peddle).

The Chipotle announcement reads like a moralistic lecture, and that no one had discovered food safety before.

A year after the outbreaks, Chipotle is now getting into standard PR – which it should have done months ago (Chipotle, your communication advisors absolutely suck). The full page ad, the video, the push for food safety.

Guacamole, for instance, now takes advantages of the cleansing properties of the lemon and lime juices in the recipe. Before getting mixed, the chopped tomatoes, onions and jalapeños are laid on top of avocados and drizzled with citrus juices in one last effort to ensure food safety.

Some scientists may question such tactics, saying they have been supplanted by newer methods. But Dr. James Marsden, Chipotle’s new executive director of food safety, who had recently retired from teaching at Kansas State University (and the father of the actor James Marsden, best known as Cyclops in the “X Men” film series) said he was confident in them.

“We’re doing research and are going to publish papers on what we’re doing, so people can see for themselves that it works,” he said.

That’s all good, but they’re still moralistic assholes who expect people to pay a premium for their food sermons (journos, contact me for Marsden stories).

Chipotle founder and Co-CEO stepped in front of a camera in a bid to win over weary diners that still aren’t hankering for the chain’s once-popular tacos and burritos.

In a video that the Mexican burrito chain unveiled on Wednesday, a contrite Ells admits that last year, the fast-casual restaurant chain “failed to live up to our own food safety standards, and in so doing, we let our customers down. At that time, I made a promise to all of our customers that we would elevate our food safety program.”

chipotleadContrite is not the word I would use.

Looking to revalue Chipotle’s share price is more accurate.

Chipotle initially blamed the Centers for Disease Control and Australian beef for its woes. Today, it blamed social media.

“No one has ever had this kind of a food safety crisis in the era of social media,” Mr. Ells said.

I could list hundreds, beginning with E. coli O157 in spinach in 2006, you arrogant poser.

“Jack In The Box,” — a burger chain where more than 700 people got sick in 1993 after eating E. coli contaminated meat — “never had to deal with Facebook and Twitter,” he said.

When I coach, I’m always telling kids, and adults, stop blaming the refs, go score a goal, stop whinging.

What is fresh? Australian beef in the U.S.?

Is this guy stealing from Trump’s playbook?

It’s slogans and hucksterism.

Which Americans seem to go for.

And Mr. Ells, since you seem content on lecturing Americans about food safety, while blaming others, here’s a history lesson.

In the Fall of 1994, Intel computer chips became scrutinized by the computer geeks, and then the public.

Intel had delayed responding to allegations, and Wall Street analysts at the time said it was the result of a corporate culture accustomed to handling technical issues rather than addressing customers’ hopes and fears.

On Monday, Nov. 12, 1994, the International Business Machines Corp. abruptly announced that its own researchers had determined that the Pentium flaw would lead to division errors much more frequently than Intel said. IBM said it was suspending shipments of personal computers containing the Pentium chip

Mr. Grove was stunned. The head of IBM’s PC division, Richard Thoman, had given no advance warning. A fax from Thoman arrived at Intel’s HQ on Monday morning after the IBM announcement, saying he had been unable to find Grove’s number during the weekend. Mr. Grove, whose number is listed, called directory assistance twice to ask for his own number to ensure he was listed.

After the IBM announcement, the number of calls to Santa Clara overwhelmed the capacity of AT&T’s West Coast long-distance telephone switching centres, blocking calls. Intel stock fell 6.5 per cent

Only then, Mr. Grove said, did he begin to realize that an engineer’s approach was inappropriate for a consumer problem.

Intel took out full-page ads, apologized, and did better.

That was in months, not a year.

Mr. Ells, you can claim you’re in uncharted territory, that no one has experienced the woes like you have, that fresh is a meaningful term.

But it’s just a repeat.

Customers may expect you to have the humility to admit such failings when driven by the hubris of your own beliefs.

But hey, anyone who can get Americans to believe that 1,000 calorie burritos are healthy can do anything you damn well please.

And customers will bow down.

Investors. I wouldn’t touch it. But I said that in 2007.

 

UK cockroach-infested curry house shut down after insects found crawling in chef hats

And more about those UK chefs.

A cockroach-infested curry house in north-east London has been ordered to shut its doors after it was discovered crawling with insects, including in chef hats.

currySouth Indian and Sri Lankan restaurant Palii Maamala in Hoe Street, Walthamstow, was closed following fears it risked customers’ health.

Food safety inspectors uncovered an infestation of cockroaches and nymphs inside the “filthy” kitchen with droppings found on shelves containing open food and dinner plates.

Insects were also seen living in a box of paper hats worn by the chefs while the cooker was thick with grease in conditions described as “disgusting”.

Containers were encrusted with old food with the filth witnessed across the entire building including an upstairs function room where cockroaches were also found.

Waltham Forest Council issued an immediate hygiene order for the curry house to shut following an inspection on Monday, September 12 over a number of food safety breaches.

The order was received at Stratford Magistrates’ Court on Wednesday September 14, confirming the closure.

 

UK cafe boss fined £20,000 after failing to act on health and hygiene concerns

About those UK chefs, a café who flouted hygiene and safety rules has been slapped with a £20,000 fine.

crown-cafe-southendThe Crown Café, in Southchurch Road, Southend, were fined after Hygiene Improvement Notices and one Health and Safety Improvement Notice were not acted upon.

During an inspection at the Crown Café in August 2015, a Chartered Environmental Health Practitioner from Southend Council found the café had no wash hand basin for hand washing only in the kitchen, no documented food safety management system to ensure the safe production of foods and a lack of maintenance to the electrical installation at the café.

As a result, two Hygiene Improvement Notices and one Health and Safety Improvement Notice were served on The Crown Café/ Bistro Limited for the attention of the owner, Agneska De’Ath (nee Janaszek).

Subsequent visits to the café on September 15 and 18 found the improvement notices had not been acted upon. 

Ms De’Ath (nee Janaszek), who is the director of the Crown Café/ Bistro Limited, and her limited company were found guilty at Southend Magistrates Court on September 14 for two food hygiene offences and one health and safety offence, which occurred at the Crow Café.

Magistrates heard the evidence given by Ms Janaszek and found her and her limited company guilty to three offences. 

Liverpool restaurant fined £14,000

How good are those UK chefs?

(Thanks to the barfblog.com reader who sent this in.)

mouse-chefRed Hot World Buffet in Liverpool One shopping centre was fined £14,000 after inspectors found an infestation of mice in the kitchen. It was also ordered to pay £7,816 costs after admitting breaching health and safety regulations.

The pic (right, exactly as shown) was from the chef’s office, with mouse shit everywhere.

Owners Passepartouts Ltd pleaded guilty to 10 counts at Liverpool Magistrates’ Court after mice droppings and beetle larvae were found during an inspection.

The restaurant closed in June and the owners are now in administration.

Environmental health officers visited the restaurant twice last year.

Live mice were caught on sticky traps and mouse droppings and grease were found next to food containers and near fridges.

BS credentials (journos, ask her a food safety question) Australian resort cited for food service violations

Christopher Walsh of Northern Territory News reports former CLP candidate Carolyn Reynolds has been cited on numerous occasions by the Department of Health for serious food service violations at her Lake Bennett Resort including staff not washing their hands, serving questionable food and keeping an “unsanitary” kitchen.

carolyn-reynoldsEnvironmental Health inspection documents obtained by the NT News show Ms Reynolds was written up in early June for a number of breaches of the Food Act, including not having proper potable water on premises and improper hygiene of employees. A follow-up review of the premises known as “Eagle Nest” restaurant showed serious breaches continued at the resort as late as June 23.

“Observation of staff — no handwashing in between duties,” the follow-up report states. “No soap in soap dispenser.

“Defrosting of foods — to be defrosted in coolroom, at time of inspection chicken breasts were defrosting in sink … not safe.”

The inspection also found expired food was stored in the same place as food she was serving customers. She was lectured then about “best before” and “use by” dates.

Department of Health officials confirmed Ms Reynolds was written-up for violations of the Food Act after “numerous complaints” but that no action was taken and that they “continue to work with the proprietor”.

“Environmental Health officers have visited the premises on a number of occasions, as recent as August and served food improvement notices to address issues identified,” a Health Department spokeswoman said. “The proprietor has taken appropriate follow up action.”

But photos taken last week, seen by the NT News, show unsanitary kitchen conditions remain, including dead cockroaches on shelves, unclean cooking areas, out of date cheeses and mouldy foodstuffs in coolers.

A former employee told the NT News Ms Reynolds would routinely serve old and expired food to customers — as late as last week. The employee also said she personally witnessed “Carolyn preparing food without washing her hands, without wiping down benches and using unclean knives quickly wiped on a dirty tea towel”.

Ms Reynolds denied all the allegations, saying she sacked kitchen staff recently “because some people hadn’t been doing things while I was doing the election”.

She added she is a “certified microbiologist” and knows about food safety. The Australian Society for Microbiology said yesterday they had no record of Ms Reynolds as a member.

“I fully understand all aspects of safe food, unfortunately, we in society probably throw away a lot more food than we should,” Ms Reynolds said. She added that claims she served children expired meat were “rubbish.”

“In no way on earth would I risk my reputation both as a chartered biologist and a business owner and as a person who loves children …” she said. “I would not risk harming children.”

Ms Reynolds, who ran for the seat of Goyder, said she was in “desperate” need of a good chef and that she may be forced to bring cooks in from the UK soon.

And they know what about food safety?

celebrity_chefs4

E. coli outbreak shows need for restaurant grading system

Paula Wissel of KNKX reports the Washington Department of Health is still investigating this month’s E. coli outbreak that forced a Seattle restaurant to close temporarily. The Matador in Seattle’s Ballard neighborhood has now reopened, but the source of the E. coli that sickened several patrons remains a mystery. Meanwhile, food safety advocates say this latest scare underscores the need for a promised restaurant grading system to be implemented quickly by public health officials.

barf-o-meter_-dec_-12-216x300-216x3001-216x300-1-216x300Back in 1993, Sarah Schacht, along with her mother and little brother, was sickened in the deadly E. coli outbreak linked to undercooked hamburgers at Jack in the Box.  Then, a few years ago, she contracted the foodborne illness again.

“The experience of getting E. coli the second time was much worse. It was feeling like my stomach was being ripped open, I had extreme cramping and I was in and out of the hospital,” Schacht said.

She is one of the primary proponents of restaurants in King County being required to post placards showing what score they received from the health department. She sat on a stakeholders panel convened by the county to come up with a system. Although Public Health of Seattle and King County announced several years ago they were going to implement a system, it has yet to be put in place, which frustrates Schacht.

“They’ve continually rolled back deadlines for this program and so it’s been disappointing to see another outbreak and no posted signs,” Schacht said.

In response, county health officials says they want to make sure that when it launches, the grading system is consistent across eating establishments. The health department has conducted a series of studies to try and figure out how best to obtain that consistency.  A grading system pilot program is scheduled to begin in January.

 

Here’s a couple of suggestions:

Filion, K. and Powell, D.A. 2009. The use of restaurant inspection disclosure systems as a means of communicating food safety information. Journal of Foodservice 20: 287-297.

larry-the_-cable_-guy_-health-inspector-213x300-213x3001-213x300-1-213x300The World Health Organization estimates that up to 30% of individuals in developed countries become ill from food or water each year. Up to 70% of these illnesses are estimated to be linked to food prepared at foodservice establishments. Consumer confidence in the safety of food prepared in restaurants is fragile, varying significantly from year to year, with many consumers attributing foodborne illness to foodservice. One of the key drivers of restaurant choice is consumer perception of the hygiene of a restaurant. Restaurant hygiene information is something consumers desire, and when available, may use to make dining decisions.

 

Filion, K. and Powell, D.A. 2011. Designing a national restaurant inspection disclosure system for New Zealand. Journal of Food Protection 74(11): 1869-1874
.

The World Health Organization estimates that up to 30% of individuals in developed countries become ill from contaminated food or water each year, and up to 70% of these illnesses are estimated to be linked to food service facilities. The aim of restaurant inspections is to reduce foodborne outbreaks and enhance consumer confidence in food service. Inspection disclosure systems have been developed as tools for consumers and incentives for food service operators. Disclosure systems are common in developed countries but are inconsistently used, possibly because previous research has not determined the best format for disclosing inspection results. This study was conducted to develop a consistent, compelling, and trusted inspection disclosure system for New Zealand. Existing international and national disclosure systems were evaluated. Two cards, a letter grade (A, B, C, or F) and a gauge (speedometer style), were designed to represent a restaurant’s inspection result and were provided to 371 premises in six districts for 3 months. Operators (n = 269) and consumers (n = 991) were interviewed to determine which card design best communicated inspection results. Less than half of the consumers noticed cards before entering the premises; these data indicated that the letter attracted more initial attention (78%) than the gauge (45%). Fifty-eight percent (38) of the operators with the gauge preferred the letter; and 79% (47) of the operators with letter preferred the letter. Eighty-eight percent (133) of the consumers in gauge districts preferred the letter, and 72% (161) of those in letter districts preferring the letter. Based on these data, the letter method was recommended for a national disclosure system for New Zealand.

 

Cutters: Primary risk with produce

The influence of a selection of minimal processing techniques (sanitizing wash prior to packaging, modified atmosphere, storage conditions under light or in the dark) was investigated in relation to the survival of, attachment to and internalization of enteric pathogens in fresh produce.

breaking_away_promo4Cut Iceberg lettuce was chosen as a model for fresh produce, Escherichia coli O157:H7 (E. coli O157) and Salmonella enterica were chosen as pathogen models. Care was taken to simulate industrial post-harvest processing. A total of 50 ± 0.1 g of fresh-cut Iceberg lettuce was packed in bags under near ambient atmospheric air with approximately 21% O2 (NAA) conditions or equilibrium modified atmosphere with 3% O2 (EMAP). Two lettuce pieces inoculated with E. coli O157 BRMSID 188 or Salmonella Typhimurium labeled with green fluorescent protein (GFP) were added to each package. The bags with cut lettuce were stored under either dark or light conditions for 2 days at 7 °C. The pathogens’ capacity to attach to the lettuce surface and cut edge was evaluated 2 days after inoculation using conventional plating technique and the internalization of the bacteria was investigated and quantified using confocal microscopy. The effect of a sanitizing wash step (40 mg/L NaClO or 40 mg/L peracetic acid + 1143 mg/L lactic acid) of the cut lettuce prior to packaging was evaluated as well.

Our results indicate that both pathogens behaved similarly under the investigated conditions. Pathogen growth was not observed, nor was there any substantial influence of the investigated atmospheric conditions or light/dark storage conditions on their attachment/internalization. The pathogens attached to and internalized via cut edges and wounds, from which they were able to penetrate into the parenchyma. Internalization through the stomata into the parenchyma was not observed, although some bacteria were found in the substomatal cavity. Washing the cut edges with sanitizing agents to reduce enteric pathogen numbers was not more effective than a rinse with precooled tap water prior to packaging.

Our results confirm that cut surfaces are the main risk for postharvest attachment and internalization of E. coli O157 and Salmonella during minimal processing and that storage and packaging conditions have no important effect.

Minimal processing of iceberg lettuce has no substantial influence on the survival, attachment and internalization of E. coli O157 and Salmonella

International Journal of Food Microbiology 238 (2016) 40–49, DOI: http://dx.doi.org/10.1016/j.ijfoodmicro.2016.07.029

I Van der Linden, KR Avalos Llano, M Eriksson, WH De Vos, EJM Van Damme, M Uyttendaele, F Devlieghere