Somehow I lost my way

Maybe it was Kansas.

A couple of weeks ago, my wife was helping me into a diaper.

The next day I was trying out a walker so I don’t fall so much.

That’s fairly humbling.

I haven’t been able to write as much as I used to, and don’t know if I ever will, because as my doctor told me recently, you’re a smart guy, you know what’s going on, and I do – most of the time.

Last Monday I was writing at home and developed a full-on seizure and could only speak gobbylgook. Amy asked me what’s her name and all I could mutter was, Bo.

I never call her Bo.

My capacity to speak returned after a couple of minutes, but I soon announced, I feel another one coming on. This time I lost consciousness, stopped breathing and woke up in the hospital. Spent the week there.

Amy and Sorenne are off to France in a few hours – she is a French professor – but somehow, we now live in this country (that would be Australia) that awarded my family support to pay for caregivers who make sure I don’t fall over when we walk to get groceries.

It’s cheaper to keep me in the home rather than an institution.

None of the money goes to us, but it means we get a weekly cleaner (who has the most fabulous tools) and I get about 3 hours of assisted care daily from these nice people. I’m getting extra hours while the family is in France.

Amy said, what kind of country do we live in?

A compassionate one.

 

 

I hate facebook

I still can’t believe I get quoted on average once a day in the weirdest places.

Guess we did some neat work over the years.

The introduction of a new technology, such as a human enhancement technology, may induce apprehension and concern among the general public. Social media enable individuals to find information and share their insights and concerns regarding new technologies. This results in an abundance of viewpoints that guides the individual’s acceptance and decision-making. A relevant question for this special issue is to what extent attitudes toward human enhancement technologies are influenced by online cues that signal the views of other people without obvious relevant expertise, such as online comments (social proof). An online experiment focusing on the enhancement of human health and the functioning of the human body through the application of nanotechnology in food was conducted. The study investigated to what extent social proof impacted views on the application of nanotechnology in food.

The valence of comments on a fake Facebook image with four comments was manipulated (positive, negative, mixed). A representative sample of Dutch Internet users (n = 289) completed the study. Perceptions, feelings, behavior, and information need were measured. Results showed that comment valence had a significant effect on risk perception, benefit perception and attitude: the more positive the comments read by the participants, the lower risk perception, the higher benefit perception and the more positive the attitude toward nanodesigned food. Significant interaction effects of initial feelings of dread and comment valence were further found for risk perception and willingness to buy. In contrast, there were no significant interactions of initial feelings of optimism and comment valence. Implications for risk communication regarding human enhancement technologies are discussed.

Risk and benefit perceptions of human enhancement technologies: The effects of Facebook comments on the acceptance of nanodesigned food

Human Behavior and Emerging Technologies

Margot Kuttschreuter and Femke Hilverda

DOI: 10.1002/hbe2.177

https://onlinelibrary.wiley.com/doi/pdf/10.1002/hbe2.177

Couple of good Brantford,Ontario (that’s in Canada) boys in The Band.

Keeping with the geneticts theme, 50,000-year-old gene reveals how deadliest malaria parasite jumped from gorillas to humans

Molly Campbell of Technology Networks writes in a study published last week  in PLOS Biolgy, researchers from the Wellcome Sanger Institute and the University of Montpellier have reconstructed a ~50,000-year-old gene sequence acquired by the ancestor of Plasmodium falciparum. The acquisition of the gene sequence enabled the parasite to infect human red blood cells.
The gene, known as Rh5, enabled the parasite to infect both gorillas and humans for a limited period of time. The study provides insight in the molecular mechanisms behind this jump.

Malaria causes 435,000 deaths per year on average, with ~61% occurring in children <5 years of age. P. falciparum is the of seven species of parasite that can cause malaria in a family known as the Laverania and causes the deadliest form of the infectious disease; in 2017, this parasite accounted for 99.7% of cases in Africa.

The Laverania parasites originated in African great apes; however, they are now restricted to their own specific host species. Three parasite species are confined to chimpanzees, and three are combined to gorillas. What about the seventh, you ask?

Pfalciparum only infects humans now, as it switched host from gorillas. This process whereby a disease is transmitted to humans from an animal is known as zoonosis. But how exactly did the switching of the parasite from gorillas to humans occur at the molecular level?

Gavin Wright, lead author of the study and Senior Group Leader at the Wellcome Sanger Institute, said: “In the history of mankind, Plasmodium falciparum malaria has arguably been responsible for more human deaths than any other disease. So, it is both important and fascinating to understand the molecular pathways that enabled this deadly parasite to infect humans.”
The evolution of P. falciparum and malaria

The scientists conducted genome sequencing of all seven Laverania parasite species, and uncovered a section of DNA that had been transferred from a gorilla parasite, Plasmodium adleri,  to the ancestor of P. falciparum. The gene sequence included Rh5, a gene that produces the protein reticulocyte binding-like protein 5, which binds to a protein receptor in human red blood cells known as basigin. The interaction of this protein and its receptor is critical for the P. falciparum parasite to infect humans, and thus Rh5 is showing promise as a potential malaria vaccine target. If scientists can disrupt the interaction, the parasite cannot enter the red blood cell and cause disease.

The research team at the University of Montpellier wanted to understand further the ancestral origins of P. falciparum. They therefore adopted ancestral sequence reconstruction to effectively “reconstruct” the Rh5 DNA sequence that had been transferred to the ancestor of P. falciparum all those 50,000 years ago. The scientists at the Wellcome Sanger Institute then created synthetic copies of the Rh5 gene in the laboratory, enabling the molecular interactions of the encoded Rh5 protein to be explored.
Interestingly, the study findings demonstrate that the transferred Rh5 protein possessed dual binding ability for the red blood cell receptor in both humans and gorillas – thus demonstrating how P. falciparum was able to switch hosts.

Francis Galaway, first author of the study and Staff Scientist at the Wellcome Sanger Institute, said: “The fact that this ancestral RH5 protein was able to bind to the red blood cell receptor basigin from both humans and gorillas, immediately provided a molecular explanation for how P. falciparum evolved to infect humans.”

But how did P. falciparum become restricted to humans? The researchers identified six differences between the ancestral Rh5 gene sequence, and the current sequence observed in P. falciparum. Surprisingly, one specific mutation resulted in the complete loss of ability to bind the gorilla form of basigin, depicting how the parasite became restricted to humans.

Franck Prugnolle, from the University of Montpellier, said: “It’s fascinating to be able to ‘resurrect’ ancestral genes such as the one which allowed Plasmodium falciparum to jump from gorillas to humans. We’ve discovered not only how a species host switch has occurred, but the individual mutation which has then restricted P. falciparum to a single host species.”

The scientists hypothesize that the genetic transfer of the Rh5 gene occurred when a gorilla cell was infected with two species of the Plasmodium parasite in parallel – known as introgression.

This form of introgression is extremely rare. Of the seven Laverania species, genomic analyses have revealed only a few instances of this occurring over a span of approximately one million years.

UK doctor, 47, is struck off after he made £72,000 signing more than 400 bogus sick notes for holidaymakers

Henry Martin of the Daily Mail reports a UK doctor who made £72,000 signing more than 400 bogus sick notes for his wife’s legal firm has been struck off the medical register.

Dr Zuber Bux, 47, filled in false illness reports from holidaymakers claiming compensation from travel firms through his solicitor wife Sehana’s law business.

Over four years Dr Bux, a GP from Blackburn, Lancashire, made about £72,000 writing more than 400 reports but did not inform holiday companies or the courts that his wife worked for AMS, the law firm that instructed him.

Koala chlamydia: A virus in koala DNA shows evolution in action

University was sorta dull, and after watching my first 3-of-4 Canadian daughters rack up huge student deficits because their mother was an asshole and kept the child support for herself rather than pass it on, I had no issue with Canadian daughter 4-of-4 taking a pass on uni and living the good life.

II’d been putting in time back in the day, to avoid jail, but it was a fouth-year virology course where my neurons started to fire and I was turned on by all things small.

We’re all just hosts on a viral planet.

So allow a viral indulgence.

And koalas are so cute and Australian.

Koalas, according to James Gorman of the New York Times, have been running into hard times. They have suffered for years from habitat destruction, dog attacks, automobile accidents. But that’s only the beginning.

They are also plagued by chlamydia and cancers like leukemia and lymphoma, and in researching those problems, scientists have found a natural laboratory in which to study one of the hottest topics in biology: how viruses can insert themselves into an animal’s DNA and sometimes change the course of evolution.

The target of this research is Koala retrovirus, or KoRV, a bit of protein and genetic material in the same family as H.I.V. that began inserting itself into the koala genome about 40,000 years ago and is now passed on from generation to generation, like genes. It is also still passed from animal, as a typical viral infection.

In recent years, scientists have found that the insertion of viruses into the genomes of animals has occurred over and over again. An estimated 8 percent of the human genome is made up of viruses left over from ancient infections, ancient as in millions of years ago, many of them in primate ancestors before human beings existed.

The koala retrovirus is unusual because 40,000 years is the blink of an eye in evolutionary time, and because the process appears to be continuing. A group of scientists reported in Cell on Thursday that they observed a genome immune system fighting to render the virus inactive now that it has established itself in the koala DNA. They also reported that koala retrovirus may have activated other ancient viral DNA. All of this activity stirs the pot of mutation and variation that is the raw material for natural selection.

Koala genetics are a gold mine, said William Theurkauf, a professor in molecular medicine at the University of Massachusetts Medical School and one of the authors of the report. “What they are going through is the process of what’s driven the evolution of every animal on the planet.”

Past viral infections have led to major evolutionary changes, he said. For example: “A gene that is absolutely essential for the placenta was derived from the shell of a virus millions of years ago.” Humans would not exist without that ancient retroviral infection.

Retroviruses are made of RNA, a single strand of genetic information. When they infect a cell, they translate themselves into DNA, the two-stranded molecule that carries all the information for making humans, koalas and other animals. The retroviruses take over the DNA machinery to make more of themselves, which keeps the process going.

That process makes us and other animals sick. AIDS is probably the best known retroviral disease. But when the insertion of a retrovirus occurs in a sperm or an egg cell, the change can become permanent, passed on forever. When retroviruses become part of an animal’s inherited DNA, they are called endogenous and eventually they no longer cause the kind of original infection they once did. But they can still be used by the animal’s genetic machinery for other purposes, like making a placenta.

“It was long thought they were just junk DNA,” said Shawn L. Chavez, a molecular biologist at the Oregon Health and Science University School of Medicine in Portland, who wrote a review of research on endogenous retroviruses in mammals. Now it is clear that some of them have changed the course of evolution. Exactly how is what scientists are trying to find out. “It seems like there’s a new publication every day,” she said.

Consequently, koalas are drawing a lot of attention from scientists who did not start out with an interest in the animal or its conservation. “I’m a fruit fly guy,” Dr. Theurkauf said. He became interested after a report in 2006 by Rachael Tarlinton of the University of Nottingham and other scientists about the invasion of the koala genome by the retrovirus.

Dr. Tarlinton began her career in Australia as a veterinarian with an interest in infectious diseases in wildlife. She became involved in the study of koala genetics because of the problem of chlamydia and because Jon Hanger, an independent researcher, had noticed very high death rates from leukemia and other cancers in koalas kept in zoos. Their research led to the discovery that koala retrovirus was causing some of the cancers and that it was not only infecting the animals but part of their genome.

Dr. Tarlinton and her colleagues established the presence of the retrovirus in koalas in Queensland, but there is another, more southern population of koalas that at first seemed not to have the virus. These koalas also had fewer chlamydia infections. The genetics of the southern population are different because most koalas in that region had been killed for the fur trade by the 1920s. A small number survived by being moved to small islands in the early 20th century.

“From that population, they’ve been reintroduced,” Dr. Tarlinton said. And those koalas have done extraordinarily well, even though they have some genetic problems. There are tens of thousands of them. In some areas they have been killed to keep the population down.

The researchers expected the southern koalas to be less healthy than the northern ones, she said. But the opposite was true.

Still, a deeper look at the southerners’ DNA showed that they weren’t free from the inherited retrovirus as initially thought. The virus was there but it was damaged. The beginning and end of its genetic code were present, but the middle was missing. A report on this work is now in bioRxiv (pronounced bio-archive), an online database for papers that have been written but not yet accepted by peer-reviewed journals.

Dr. Tarlinton and the other researchers plan to submit the research soon. The missing middle could be the key to the health of the southern koalas.

“I think there’s a pretty good chance that having this defective version can be protective,” she said.

Seek and ye shall find

I have so many Larry stories that I’d probably get sued now that he’s a big shot.

But when I was teaching him and Kevin, about 1995 (I may have noticed Chapman joined my lab about 1999, it’s all a purple haze, but I got those 70 peer-reviewed papers out and made full-professor) so here’s Larry, now that he’s returned to Guelph (that’s in Ontario, Canada) and maybe you have a chat with Malcolm, see about getting my $750,000 returned and we can do some fun research.

And I won’t ever tell anyone about Atlanta.

Despite appearances, experts say a recent rise in major recalls is not a sign of food supply problems, but the result of a more active investigative body and better testing tools — though they add more can be done.

“This is proof that the system is working well,” said Lawrence Goodridge, a professor focusing on food safety at The University of Guelph, speaking about the recent meat recall.

Yet, he believes that “in Canada, we have to get to a place where we can actually stop the food from going to retail in the first place.”

Since Sept. 20, a investigation by the Canadian Food Inspection Agency into possible E. coli 0157:H7 contamination in some beef and veal products sold by Ryding-Regency Meat Packers Ltd. and St. Ann’s Foods Inc. has led to the recall of nearly 700 products.

The CFIA suspended the Canadian food safety license for St. Ann’s meat-processing plant, as well as Ryding-Regency’s slaughter and processing plant, both in Toronto, in late September.

No illnesses have been reported in association with the products, according to the CFIA, but symptoms of sickness can include nausea, vomiting, abdominal cramps.
x

We all skate into the fog sometimes: University students protest in Tehran after 200 fall victim to food poisoning

More than 200 students at the University of Science and Technology in Tehran have been taken to the hospital for food poisoning at the university’s canteen since Tuesday October 15, Iranian media reported.

The students have staged a sit-in in front of the University in protest to the situation, the reports said.

A student union official told the semi-official news agency ISNA late Wednesday that the Union has called on officials to present a report on the situation within a week, “otherwise, protest gatherings will continue.” This means that the gatherings have been suspended for the time being.

A brain is a terrible thing to lose

I called my sister about 4 a.m., her time.

She was patient enough.

Hubby answered the phone and said, Doug, it’s 4 a.m.

I apologized.

A few hours later I called my partner, thinking it was evening; it was 5:30a.m.

She was not pleased.

We only get up that early for hockey.

Through the infrastucture of Brisbane (that’s in Queensland, Australia) I know I have people lined up to care for me.

Still, a brain is a terrible thing to lose. And I watched it in my grandfather and grandmother 40 years ago.

Bad, naughty, naughty parents: Outbreak of Salmonella saintpaul in a Scottish childcare facility: The influence of parental under-reporting

Salmonella outbreaks in childcare facilities are relatively rare, most often occurring secondary to contaminated food products or poor infection control practices. We report an outbreak of Salmonella Saintpaul at a pre-school facility in Ayrshire, Scotland with atypical clinical and epidemiological features.

(me learning to drive a tractor, about 4-years-old)

Methods

Following notification of the initial two cases, the multi-disciplinary Incident Management Team initiated enhanced active case finding and two environmental inspections of the site, including food preparation areas. Parent and staff interviews were conducted by the Public Health department covering attendance, symptomatology and risk factors for all probable and confirmed cases. Microbiological testing of stool samples and the facility water tank was conducted. Whole Genome Sequencing (WGS) was performed for positive stool samples at the national reference laboratory. Infection control measures were introduced iteratively due to the atypical progression of the outbreak.

Results

There were 15 confirmed cases and 3 children admitted to hospital during the outbreak. However, 35.7% of cases reported extremely mild symptoms. The attack rate was 15.2%, and age of affected children ranged from 18 to 58 months (mean 35 months). All cases were the same Multilocus Sequence Type (MLST50). Epidemiological investigation strongly suggested person-to-person spread within the facility. Existing infection control practices were found to be of a high standard, but introduction of additional evidence-based control measures was inadequate in halting transmission. Facility staff reported concerns about lack of parental disclosure of gastrointestinal symptoms, particularly where these were mild, with 50.0% of cases having attended while symptomatic against public health advice. Voluntary two-week closure of the facility was implemented to halt transmission, following which there were no new cases. WGS results were unavailable until after the decision was taken to close the facility.

Conclusions

This is the first reported instance of a Salmonella Saintpaul outbreak at a childcare facility, or where person-to-person transmission is indicated. Clinicians should consider the influence of parental under-reporting on gastrointestinal outbreaks in childcare settings, particularly where perceived severity is low and financial or social pressures to attend work may reduce compliance. WGS cannot yet replace conventional microbiological techniques during short, localised outbreaks due to delays receiving results.

Balloon-wiping teacher goes viral in video teaching critical bathroom-wiping skills

Kristi Pahr of Yahoo writes that parents expect their kids to learn a number of things in preschool—the alphabet and number sense, maybe how to write their name, socialization and the beginnings of conflict resolution. But not many parents expect their kids to learn how to, ahem, wipe their butts in preschool. That’s usually the kind of thing we expect to teach at home. Handwashing? Yes. Butt-wiping? Doesn’t happen at my kid’s preschool.

A video, that appears to be of a classroom abroad, shared widely on social media showed us what we’ve been missing. This absolutely brilliant teacher came up with the best wipe-teaching hack ever. By attaching two balloons to a small chair, she showed kids the perfect front-to-back technique, while showing them how to balance on the potty. We all stress the importance of proper handwashing, cough covers, and nose-blowing and expect those to be, if not taught in preschool, at least brushed-up on and practiced. Maybe it’s time for bottom-cleanliness to take center-stage in American preschools as well.

The origins of the video are unknown, but various versions shared online have been fairly well-received, with parents around the Twittersphere acknowledging the sheer genius of the balloon models.